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This page contains links to directories containing raw and processed
data for mouse ENCODE data produced as part of the ENCODE production phase
(September 2007-present). Formats are described on the UCSC Browser
File Format FAQ. For bulk download, retrieval by
FTP
is recommended. All files here are covered by the
ENCODE data release policy.
Preview of unreleased data for download is available from the
Test download server
and by
FTP.
Preview data is made available with the warning that it has not yet been reviewed by UCSC for
correctness and is subject to change at any time.
| Bidirectional Promoters |
| NHGRI BiP |
NHGRI Elnitski Bidirectional Promoters |
| Chromatin Accessibility |
| UW DNaseI HS |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| Histone Modification |
| Caltech Histone |
Histone Modifications by ChIP-seq from ENCODE/Caltech |
| LICR Histone |
Histone Modifications by ChIP-seq from ENCODE/LICR |
| PSU Histone |
Histone Modifications by ChIP-seq from ENCODE/PSU |
| Stan/Yale Histone |
Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale |
| Transcription Factor Binding Sites |
| Caltech TFBS |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/Caltech |
| LICR TFBS |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR |
| PSU TFBS |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU |
| Stan/Yale TFBS |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale |
| RNA-seq |
| Caltech RNA-seq |
RNA-seq from ENCODE/Caltech |
| CSHL Long RNA-seq |
Long RNA-seq from ENCODE/CSHL |
| LICR RNA-seq |
RNA-seq from ENCODE/LICR |
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